Alter A.I.L.A. Genesis

First, I want to thank Neok and his team for creating such a great game.

(I don't know how to use spoiler tags here, so I'll try not to give too much away in my question.)

I managed to get to the O.P. Lv. 4, and can't seem to be able to advance any further at the moment. From the clues given it seems like I have to get all the extra abilities and do something with a big red/black figure. Problem is, I don't really know where to start looking for this figure, and I also wonder if there's a way to mark areas with extra abilities ( like the unique syncs in the Pan. ).